Publications for Peter Svensson

Article

1 Furtado Milão J, Love L, Gourgi G, Derhaschnig L, Svensson JP, Sönnerborg A, van Domselaar R. Natural killer cells induce HIV-1 latency reversal after treatment with pan-caspase inhibitors. Frontiers in immunology 2022 13: 1067767-
2 Svensson Akusjärvi S, Krishnan S, Jütte BB, Ambikan AT, Gupta S, Rodriguez JE, Végvári Á, Sperk M, Nowak P, Vesterbacka J, Svensson JP, Sönnerborg A, Neogi U. Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals. Communications biology 2022 5:1 357-
3 Lindqvist B, Jütte BB, Love L, Assi W, Roux J, Sönnerborg A, Tezil T, Verdin E, Svensson JP. T cell stimulation remodels the latently HIV-1 infected cell population by differential activation of proviral chromatin. PLoS pathogens 2022 18:6 e1010555-
4 Shoaib M, Chen Q, Shi X, Nair N, Prasanna C, Yang R, Walter D, Frederiksen KS, Einarsson H, Svensson JP, Liu CF, Ekwall K, Lerdrup M, Nordenskiöld L, Sørensen CS. Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes. Nature communications 2021 12:1 4800-
5 Dong W, Oya E, Zahedi Y, Prasad P, Svensson JP, Lennartsson A, Ekwall K, Durand-Dubief M. Abo1 is required for the H3K9me2 to H3K9me3 transition in heterochromatin. Scientific reports 2020 10:1 6055-
6 Varnoosfaderani FS, Palau A, Dong WB, Persson J, Durand-Dubief M, Svensson JP, Lennartsson A. A regulatory role for CHD2 in myelopoiesis. EPIGENETICS 2020 15:6-7 702-714
7 Sansó M, Parua PK, Pinto D, Svensson JP, Pagé V, Bitton DA, MacKinnon S, Garcia P, Hidalgo E, Bähler J, Tanny JC, Fisher RP. Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription. Nucleic acids research 2020 48:13 7154-7168
8 Lindqvist B, Svensson Akusjärvi S, Sönnerborg A, Dimitriou M, Svensson JP. Chromatin maturation of the HIV-1 provirus in primary resting CD4+ T cells. PLoS pathogens 2020 16:1 e1008264-
9 Ait-Saada A, Khorosjutina O, Chen J, Kramarz K, Maksimov V, Svensson JP, Lambert S, Ekwall K. Chromatin remodeler Fft3 plays a dual role at blocked DNA replication forks. Life science alliance 2019 2:5
10 Battivelli E, Dahabieh MS, Abdel-Mohsen M, Svensson JP, Tojal Da Silva I, Cohn LB, Gramatica A, Deeks S, Greene WC, Pillai SK, Verdin E. Distinct chromatin functional states correlate with HIV latency reactivation in infected primary CD4+ T cells. eLife 2018 7:
11 Besnard E, Hakre S, Kampmann M, Lim HW, Hosmane NN, Martin A, Bassik MC, Verschueren E, Battivelli E, Chan J, Svensson JP, Gramatica A, Conrad RJ, Ott M, Greene WC, Krogan NJ, Siliciano RF, Weissman JS, Verdin E. The mTOR Complex Controls HIV Latency. Cell host & microbe 2016 20:6 785-797
12 Svensson JP, Shukla M, Menendez-Benito V, Norman-Axelsson U, Audergon P, Sinha I, Tanny JC, Allshire RC, Ekwall K. A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin. Genome research 2015 25:6 872-83
13 Zhao H, Sifakis EG, Sumida N, Millán-Ariño L, Scholz BA, Svensson JP, Chen X, Ronnegren AL, Mallet de Lima CD, Varnoosfaderani FS, Shi C, Loseva O, Yammine S, Israelsson M, Rathje LS, Németi B, Fredlund E, Helleday T, Imreh MP, Göndör A. PARP1- and CTCF-Mediated Interactions between Active and Repressed Chromatin at the Lamina Promote Oscillating Transcription. Molecular cell 2015 59:6 984-97
14 Sadeghi L, Prasad P, Ekwall K, Cohen A, Svensson JP. The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast. EMBO reports 2015 16:12 1673-87
15 Sadeghi L, Siggens L, Svensson JP, Ekwall K. Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity. Nature structural & molecular biology 2014 21:3 236-43

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Fulltext: https://doi.org/10.1038/nsmb.2776
16 Svensson JP, Quirós Pesudo L, McRee SK, Adeleye Y, Carmichael P, Samson LD. Genomic phenotyping by barcode sequencing broadly distinguishes between alkylating agents, oxidizing agents, and non-genotoxic agents, and reveals a role for aromatic amino acids in cellular recovery after quinone exposure. PloS one 2013 8:9 e73736-
17 Vahey MD, Pesudo LQ, Svensson JP, Samson LD, Voldman J. Microfluidic genome-wide profiling of intrinsic electrical properties in Saccharomyces cerevisiae. LAB ON A CHIP 2013 13:14 2754-63

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Fulltext: https://doi.org/10.1039/c3lc50162k
18 Pointner J, Persson J, Prasad P, Norman-Axelsson U, Stralfors A, Khorosjutina O, Krietenstein N, Svensson JP, Ekwall K, Korber P. CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe. EMBO JOURNAL 2012 31:23 4388-403
19 Choi ES, Stralfors A, Catania S, Castillo AG, Svensson JP, Pidoux AL, Ekwall K, Allshire RC. Factors That Promote H3 Chromatin Integrity during Transcription Prevent Promiscuous Deposition of CENP-A(Cnp1) in Fission Yeast. PLOS GENETICS 2012 8:9 e1002985-
20 Ryan CJ, Roguev A, Patrick K, Xu JW, Jahari H, Tong ZT, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang LL, Kuo D, Tosti E, Kim HS, Edelmann W, Keogh MC, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ. Hierarchical Modularity and the Evolution of Genetic Interactomes across Species. MOLECULAR CELL 2012 46:5 691-704
21 Svensson JP, Fry RC, Wang EM, Somoza LA, Samson LD. Identification of Novel Human Damage Response Proteins Targeted through Yeast Orthology. PLOS ONE 2012 7:5 e37368-
22 Svensson JP, Pesudo LQ, Fry RC, Adeleye YA, Carmichael P, Samson LD. Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance. BMC SYSTEMS BIOLOGY 2011 5: 157-
23 Sadeghi L, Bonilla C, Stralfors A, Ekwall K, Svensson JP. Podbat: A Novel Genomic Tool Reveals Swr1-Independent H2A.Z Incorporation at Gene Coding Sequences through Epigenetic Meta-Analysis. PLOS COMPUTATIONAL BIOLOGY 2011 7:8 e1002163-
24 Fry RC, Svensson JP, Valiathan C, Wang E, Hogan BJ, Bhattacharya S, Bugni JM, Whittaker CA, Samson LD. Genomic predictors of interindividual differences in response to DNA damaging agents. GENES & DEVELOPMENT 2008 22:19 2621-6
25 Fry RC, Navasumrit P, Valiathan C, Svensson JP, Hogan BJ, Luo M, Bhattacharya S, Kandjanapa K, Soontararuks S, Nookabkaew S, Mahidol C, Ruchirawat M, Samson LD. Activation of inflammation/NF-kappa B signaling in infants born to arsenic-exposed mothers. PLOS GENETICS 2007 3:11 e207-
26 Kruse JJCM, Svensson JP, Huigsloot M, Giphart-Gassler M, Schoonen WGEJ, Polman JEM, Horbach GJ, van de Water B, Vrieling H. A portrait of cisplatin-induced transcriptional changes in mouse embryonic stem cells reveals a dominant p53-like response. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS 2007 617:1-2 58-70
27 Rusyn I, Fry RC, Begley TJ, Klapacz J, Svensson JP, Ambrose M, Samson LD. Transcriptional Networks in S-cerevisiae Linked to an Accumulation of Base Excision Repair Intermediates. PLOS ONE 2007 2:11 e1252-
28 van Bezooijen RL, Svensson JP, Eefting D, Visser A, van der Horst G, Karperien M, Quax PH, Vrieling H, Papapoulos SE, ten Dijke P, Lowik CW. Wnt but not BMP signaling is involved in the inhibitory action of sclerostin on BMP-stimulated bone formation. JOURNAL OF BONE AND MINERAL RESEARCH 2007 22:1 19-28
29 Svensson JP, Stalpers LJA, Esveldt-van Lange REE, Franken NAP, Haveman J, Klein B, Turesson I, Vrieling H, Giphart-Gassler M. Analysis of gene expression using gene sets discriminates cancer patients with and without late radiation toxicity. PLOS MEDICINE 2006 3:10 e422-
30 Svensson JP, de Menezes RX, Turesson I, Giphart-Gassler M, Vrieling H. Dissecting systems-wide data using mixture models: application to identify affected cellular processes. BMC BIOINFORMATICS 2005 6: 177-
31 Tafrechi RSJ, Svensson PJ, Janssen GMC, Szuhai K, Maassen JA, Raap AK. Distinct nuclear gene expression profiles in cells with mtDNA depletion and homoplasmic A3243G mutation. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS 2005 578:1-2 43-52
32 Boerma M, van der Wees CGC, Vrieling H, Svensson JP, Wondergem J, van der Laarse A, Mullenders LHF, van Zeeland AA. Microarray analysis of gene expression profiles of cardiac myocytes and fibroblasts after mechanical stress, ionising or ultraviolet radiation. BMC GENOMICS 2005 6: 6-

Review

1 Svensson JP. Targeting Epigenetics to Cure HIV-1: Lessons From (and for) Cancer Treatment. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY 2021 11: 668637-

Editorial

1 Svensson JP, Ekwall K. Epigenetic activation and inactivation of centromeres. Epigenomics 2014 6:5 451-4

View record in PubMed®

Fulltext: https://doi.org/10.2217/epi.14.33

News

1 Fry RC, Svensson JP, Valiathan C. Scientists find genes to predict chemotherapy outcome. PERSONALIZED MEDICINE 2008 5:6 561-563

Other

1 Quiros L, Svensson P, Wang E, Fry R, Samson LD. Analyzing genetic interactions to elucidate DNA damage responsive networks and toxicity mechanisms of environmental agents in yeast. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2008 49:7 578-578
2 Svensson P, Rebecca FR, Samson LD. Identifying novel human damage response proteins based on yeast orthology. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2008 49:7 578-578
3 Jahangir R, Svensson P, Janssen G, Szuhai K, Maassen JA, Raap A. Mitochondrial DNA mutations distinctively alter nuclear gene expression. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2004 1657: 82-82